Porting the Genomic OS

The genome can be thought of as an operating system; it runs on the cell's hardware platform (which is generally created by the operating system in perhaps the most impressive kind of biological bootstrapping). An interesting question is whether you can port the genomic OS from one kind of hardware to another. The answer is "yes":

Researchers at the J. Craig Venter Institute (JCVI) today announced the results of work on genome transplantation methods allowing them to transform one type of bacteria into another type dictated by the transplanted chromosome. The work, published online in the journal Science, by JCVI’s Carole Lartigue, Ph.D. and colleagues, outlines the methods and techniques used to change one bacterial species, Mycoplasma capricolum into another, Mycoplasma mycoides Large Colony (LC), by replacing one organism’s genome with the other one’s genome.

The next stage is to hack the genomic OS:

The ability to transfer the naked DNA isolated from one species into a second microbial species paves the way for next experiments to transplant a fully synthetic bacterial chromosome into a living organism and if successful, “boot up” the new entity. There are many important applications of synthetic genomics research including development of new energy sources and as means to produce pharmaceuticals, chemicals or textiles.

It also allows all kinds of synthesised nasties, as the team behind the work recognise:

Dr. Venter and the team at JCVI continue to be concerned with the societal implications of their work and the field of synthetic genomics generally. As such, the Institute’s policy team, along with the Center for Strategic & International Studies (CSIS), and the Massachusetts Institute of Technology (MIT), were funded by a grant from the Alfred P. Sloan Foundation for a 15-month study to explore the risks and benefits of this emerging technology, as well as possible safeguards to prevent abuse, including bioterrorism. After several workshops and public sessions the group is set to publish a report in summer 2007 outlining options for the field and its researchers.

Heavy stuff.

The Penguin Goes to Redmond

Well, to Redmond Magazine, that is....

Google: Evil Costs Extra

"Don't be evil" is Google's motto. Perhaps they need to amend that to "don't be evil unless it's really profitable" in the light of the following:

The New York Times calls Sicko a “cinematic indictment of the American health care system.” The film is generating significant buzz and is sure to spur a lively conversation about health coverage, care, and quality in America. While legislators, litigators, and patient groups are growing excited, others among us are growing anxious. And why wouldn’t they? Moore attacks health insurers, health providers, and pharmaceutical companies by connecting them to isolated and emotional stories of the system at its worst. Moore’s film portrays the industry as money and marketing driven, and fails to show healthcare’s interest in patient well-being and care.

The healthcare industry is "money and marketing driven"? Surely not.

But don't worry, cuddly old Google has the solution to this wicked insinuation:

We can place text ads, video ads, and rich media ads in paid search results or in relevant websites within our ever-expanding content network. Whatever the problem, Google can act as a platform for educating the public and promoting your message. We help you connect your company’s assets while helping users find the information they seek.

Now that's what I call sicko....

Update 1: Feeble attempt to undo some of the damage here. Alas, entropy and nursery rhymes remind us that the egg of integrity, once broken, cannot be put together again.

Update 2: Oooh, look: hypocrisy, too.

Update 3: Google slowly gets it.

Irving Wladawsky-Berger: And Another Thing

I interviewed Irving Wladawsky-Berger twice: once for Rebel Code, soon after IBM announced its support for GNU/Linux - arguably one of the key moments in the corporate acceptance of open source - and once for the Guardian, shortly before he retired from IBM. On both occasions he was a pleasure to talk to.

And now I find another reason to like the chap:

One of my favorite films is the 1956 science fiction classic Forbidden Planet.

Me too, me too.

Happy Hacking v3

GPLv3 is out.

EU Gets Open Sourcier

The EU is at it again:

An EU-funded consortium will address one of the perceived barriers for the adoption of open source software and prove once and for all that software which is free and publishes its source code, is capable of outperforming anything else on the market. ‘Flossquality.eu’ is an initiative made up of the three EU research projects: QUALOSS, FLOSSMETRICS and SQO-OSS, demonstrating a strong commitment between partners involved in different projects. The intention is that this initiative will facilitate access to information by disseminating news via a joint RSS feed. ‘Flossquality.eu’ will transform the cooperative way of working between these corresponding projects into hard evidence regarding software quality in an open source.

So there we have it - whatever it is. Still, spending all these Euros on something to do with open source must be a good thing. Probably.

E-vote? Ew-vote

Rather belatedly (sorry, ORG) I got round to reading the Open Rights Group report on the e-voting trials in the UK. It's fantastic stuff - well, the report is, at least: its content is pretty frightening.

This paragraph in the Recommendations said it all, really:

ORG’s position is that e-voting and e-counting provide considerable risks to the integrity of our democracy. The risks presented far outweigh any benefits the systems might potentially offer. In practice the systems have proved to be more expensive, less robust, and considerably slower than manual methods, so any potential benefits are not felt. ORG received some comments which suggest that e-voting and e-counting are inevitable and that to oppose these technologies would be a Luddite view. ORG disagrees, and it is telling that a significant proportion of those concerned about voting technologies are computer scientists and professionals, who are usually enthusiastic adopters of new technology.

What's interesting is not just the damning indictment of e-voting that it offers, but the paradox of "enthusiastic adopters of new technology" who are nonetheless "concerned about voting technologies". I count myself as belonging to this schizophrenic group: it seems clear to me that today's e-voting technologies are simply not reliable enough to entrust our democracy to it.

Interestingly, the central problem is openness, or lack of it: if the entire e-voting process could be made totally open and observable, while preserving confidentiality, many of the most worrying problems would go away.

iPlayer Frothing at the Mouth

I've done my fair share of apoplectic frothing over the disgrace that is the BBC iPlayer, but here's a further helping, courtesy of the Guardian Technology blog.

Plugging in to Asay Power

I met up with Matt Asay (pronounced "ay-see") recently. I learned from this that he's had what amounts to the perfect career in open source business: training as a lawyer (including some work with Larry Lessig), then stints with Lineo (a pioneering embedded Linux company) and Novell (during which time he founded the Open Source Business Conference) before joining Alfresco, an enterprise content management company that is one of a whole new generation of businesses that collectively make up the open source enterprise stack.

My meeting also confirmed something that I had suspected for a while: that he is the most astute commentator on the open source business scene, bar none.

He has a new outlet for these insights in the form of the blog "The Open Road" on C|net (which means, unfortunately, that the URLs are totally opaque), where he is churning out posts at a rate that puts mere professional writers such as myself to shame. To make matters worse, he's come up with a blindingly obvious and brilliant wheeze for both generating lots of interesting copy and also providing what amounts to a grand conspectus of the entire open source business scene: an emailed survey of top CEOs there. Now, why couldn't I have thought of that?

The results are required reading for anyone who wants to understand the state of free software in the world of business today - and where it's going tomorrow. Here's the list of interviews:

Dave Rosenberg, MuleSource

Javier Soltero, Hyperic

Marten Mickos, MySQL

John Powell, Alfresco

Fabrizio Capobianco, Funambol

Boris Kraft, Magnolia

Kelly Herrell, Vyatta

Satish Dharmaraj, Zimbra

Ranga Rangachari, Groundwork

Dries Buytaert, Drupal

John Roberts, SugarCRM

Toby Oliver, Path Intelligence

Danny Windham, Digium

Bill Karpovich, Zenoss

Mark Brewer, Covalent

Gianugo Rabellini, Sourcesense

Bob Walter, Untangle

Paul Doscher, JasperSoft

Pete Childers, Zmanda

Rod Johnson, Interface 21

Harold Goldberg, Zend Technologies

Eero Teerikorpi, Continuent

In the Middle of the Road...

Two major themes on this blog are free software and virtual worlds. So I'm grateful to Danté Jones for pointing out LA Second Life, which sits neatly at the intersection of the two:

This site is here so that people can see what the Linux Australia members are doing in-world as well as a resource for Linux users interested in Second Life.

As well as those handy resources, the site also flags up news about the Second Life activities of Linux Australia's members, among whom we find Gizzy Electricteeth, whom I had the pleasure of meeting virtually a few months back.

One issue that the site has just raised concerns SL's new voice feature:

Is being mute better than a voice without freedom?

Linux users of Second Life seeing voice currently being supported in all but their Viewer, are posed with that question.

Reading through a job logged in March in the SL JIRA issue tracker titled 'Support Voice on Linux', two things become clear;

1) Linden Lab have licensed Vivox to provide propriety code for Voice.
2) If they ever do support the Linux viewer it will be with a closed 'binary blob'.

Judging by their past actions, I'd say that Linden Lab would love to get this code fully open and cross-platform, but are taking a pragmatic route towards that. Here's what Linden's CTO Cory Ondrejka told me six months ago:

Certainly, there is the question of proprietary code. We may be able to do exactly what we did on the client side, where we are distributing binaries. In six months, when this [move to open up the client] is successful, it may make for very interesting conversations with folks. We can say: Hey, look, you are the leader in this sector, you should open source, here's why we did it and it worked. And I think the fact that there aren't any proof-points of that is maybe part of what scares companies from doing that. I think we're going to be a very interesting test case.

As well as encouraging other software houses to open up, I get the impression that Linden would also be interested in dropping in open source replacements for proprietary code. Time for Linux Australia to get hacking, perhaps.

Eclipse Eclipses Itself

As I wrote over a year ago, Eclipse is really open source's best-kept secret. Today, the best got even better:

The Eclipse Foundation today announced the availability of its annual coordinated project release, this year code named Europa. Europa features 21 Eclipse projects for software developers and is more than double the size of last year's record-setting release.

The release consists of more than 17 million lines of code and the contributions of over 310 open source developers located in 19 different countries. The 2006 release, code named Callisto, involved 10 project teams, 7 million lines of code, and 260 open-source developers in 12 countries. This is the fourth year in a row the Eclipse community has shipped a major release on schedule.

Innovations in the Europa release include new runtime technology for creating server applications, developer tools for service-oriented architecture (SOA), tools for improving team collaboration and support for users of the popular Ruby programming language.

Wow.

BBC's Slap in the Face of Freedom

So the BBC has brought forward its launch of the wretched iPlayer - it wouldn't be that they're trying to pre-empt things, would it?

This is particularly rich:

Jana Bennett, Director of BBC Vision, said: "This is a significant moment, as it heralds a new era when viewers will have the freedom to watch programmes from the BBC's linear TV channels when they want.

Well, no, darling, not actually: freedom is precisely what it does not offer licence-payers such as myself. It offers only chains - kindly provided by Microsoft, ones of whose boys is joining the BBC (now there's a coincidence).

And not content with that slap in the face of freedom, there's this:

Developing a version for Apple Macs and Microsoft Vista is absolutely on our critical path.

Oh, right, let's make sure every Windows operating system is supported as a priority (don't forget the super-important Windows ME). No point wasting time supporting any of those irrelevant "free" platforms like GNU/Linux now that viewers have the much more important "freedom" to slip on Microsoft's slinky DRM so that they can watch all those groovy "linear TV channels".

Thank goodness for the OSC.

Enclosing the Commons, 21st-Century Style

In an age where commons are rare and exotic beasts, "enclosing the commons" seems quaint rather than troubling. But in the modern context, this is what enclosure means:

Amateur photographer Chip Py was wandering around the newly developed downtown section of Silver Spring when he decided to snap a few pictures. He thought the building rooftops set against the blue sky made for a handsome image. A security guard promptly rushed out to tell him that he was not allowed to take pictures; the Peterson Companies, the developer of Ellsworth Street, prohibited it.

Welcome to the latest enclosure of the commons: privately controlled public streets. Even if streets may be nominally public, companies have few qualms about claiming them as private and bullying people into forfeiting their rights as citizens.

Solving the Open Source Conundrum

As I've written elsewhere, people have realised that there's a bit of a problem with the term "open source". It's becoming too popular: too many people want to stick the "open source" label on their wares without worrying about the details - like whether they conform to the "official" Open Source Definition (OSD).

The real conundrum is this: how can the use of the term "open source" be policed when it has no legal standing, since it is not a trademark. Theoretically, anyone can use it with impunity - for anything. This is obviously a problem for the "real" open source world, which needs to find a way to encourage vendors to use the term responsibly.

Peer pressure is certainly important here, but there may be another factor. In the course of research for a feature, I came across IBM's big patent pledge of January 2005:

IBM today pledged open access to key innovations covered by 500 IBM software patents to individuals and groups working on open source software. IBM believes this is the largest pledge ever of patents of any kind and represents a major shift in the way IBM manages and deploys its intellectual property (IP) portfolio.

Back then, this was mildly interesting, if greeted with a certain cynicism. But today, in the wake of Microsoft's sabre-rattling, patents are much more of an issue for all open source companies, which makes the next paragraph of the IBM announcement particularly pertinent:

The pledge is applicable to any individual, community, or company working on or using software that meets the Open Source Initiative (OSI) definition of open source software now or in the future.

So there we have a major incentive to meet the OSI definition of open source: if you do, IBM will let you use a good wodge of its patents. This means that in the event of patent Armageddon, where IBM and Microsoft slug it out in the courts, you will not only be safe from any direct attacks from IBM, but might even enjoy the indirect halo effect of IBM's patent portfolio.

Although IBM has not exactly guaranteed it would come rushing to the aid of any OSI-approved damsel in distress if it were attacked by the Microsoft dragon, its patent pledge does contain an element of this implicitly. It's certainly easy to see the benefits for IBM of such a move, both in terms of positive publicity and direct competitive advantage. At the very least, Microsoft is likely to think twice about attacking any company that has this kind of patent hook up with Big Blue.

If you don't adopt the OSI approach, though, you're outside the IBM castle, and on your tod when that nice Mr Ballmer comes calling about those patents he claims your company infringes. And since you're not playing nicely with the official OSI crew, don't expect any help from its big corporate chum, IBM.

Now, tell me again why you don't want to go legit with this "open source" label?

Offiziell: de.wikipedia.org ist Offiziell

Here's an interesting precedent being set:

For the first time, the German edition of the open Internet encyclopedia Wikipedia will be receiving state funding. Germany will be setting aside part of its budget to improve information about renewable resources in Wikipedia. Over the next few years, several hundred articles will be written on this issue.

"A number of key words already have excellent entries in the German Wikipedia" within the field of renewable resources, explains Andreas Schütte. Schütte is the executive director of the Renewable Resources Agency (FNR), which receives funding from the German Ministry of Nutrition, Agriculture, and Consumer Protection to conduct research on renewable resources with an eye to launching products on the market. At the same time, Schütte says that a number of key words in the German Wikipedia have very short descriptions, are not up to date, or are missing entirely.

Entries on this topic are to be improved under the direction of the private-sector Nova Institute. The Institute plans to get external experts to write entries on renewable resources for Wikipedia. These experts will first receive training for Wikipedia because collaboration in the community project has its pitfalls. The Institute is therefore looking for someone well versed in Wikipedia to handle project coordination. The project partners have issued a call for tenders for that position. Wikipedia experts can send in their applications immediately.

The benefits of expanding this approach are great. The state gets to distribute useful information, highly efficiently, and helps to ensure its reliability. The users, of course, gain enormously from this new influx of quality contributions.

Even the Wikipedians gain, since in the future there might be the prospect that they could be commissioned by governments to write high-quality articles on particular subjects (but with editorial independence).

And if other governments start following suit, the long-term viability of the entire Wikipedia project - still rather uncertain, at present - will be transformed completely.

All-in-all, this move by the German ministry represents a small but important step towards making Wikipedia into an all-encompassing reference, subsuming both official and unofficial information.

Here Be (Virtual) Dragons

A nice scamper along the virtual horizon has just appeared: the Metaverse Roadmap (MVR).

The MVR has “near-term” anticipation horizon of ten years (to 2017), a “longer-term” speculation horizon of twenty years (to 2025), and a charter to discover early indicators of significant developments ahead.

Nothing staggeringly new, but lots of interesting ideas, well presented. Highly recommended as a guide to the near future of the metaverse. Start planning those virtual hols now.

Opener Than Thou

What's interesting about the news that LinkedIn is going to "open up" is that it is happening as a direct result of competitive pressure:

He told me that over next 9 months LinkedIn would deliver APIs for developers, ostensibly to make it more of platform like Facebook, and create a way for users who spend more time socially in Facebook to get LlinkedIn notifications.

In other words, once somebody in a space starts opening up, its competitors simply have no choice but to follow if they want to keep the developers with them - absent unnatural constraints like lock-ins born of long-standing monopolistic behaviour....

Nooxml

Not, as you might think, an Aztec god....

Open Textbook Joins the Family

Today we are pleased to announce the launch of http://www.opentextbook.org/, a place to list and keep track of news about textbooks that are open in accordance with the Open Knowledge Definition — i.e. free to use, reuse, and redistribute. We welcome participation in the project and if anyone has a textbook or notes they’d like to see listed or would like to be a contributor to the site please head on over to http://www.opentextbook.org/.

More here.

Is Microsoft People-Ready?

It's interesting that the brouhaha over Microsoft's "people-ready" campaign involving top bloggers mouthing incomprehensible sound-bites about "people-readiness" has concentrated on castigating the bloggers involved. But what I find interesting is the light it throws on Microsoft.

The whole campaign is just so maladroit: using blogger stars in this way shows that the company simply has no idea of how the blogosphere - glorified echo-chamber that it so often is - works. This crescendo of self-righteousness on the part of other bloggers was inevitable: it's not like this kind of collective breast-beating hasn't happened before.

Which goes to show that in its dealings with this quintessentially people-centric medium, Microsoft is, to coin a phrase, deeply "people-unready".

Of Open Knowledge and Closed Minds

Extraordinary:

US university students will not be able to work late at the campus, travel abroad, show interest in their colleagues' work, have friends outside the United States, engage in independent research, or make extra money without the prior consent of the authorities, according to a set of guidelines given to administrators by the FBI.

Better shut down that pesky Internet thingy while you're at it - who knows what knowledge may be seeping out through it? (Via The Inquirer.)

Funny Old Business.com

This is just a test to see if anyone's awake, right?

Entrepreneurs Jake Winebaum and Sky Dayton were widely mocked for lavishing $7.5 million on a single Internet domain name -- business.com -- back in 1999. It was the single highest price paid for a domain name at the time.

Now look who is having the last laugh.

The company that grew out of business.com -- a search engine used by businesses to find products and services -- is now on the auction block, and could fetch anywhere between $300 million and $400 million, according to people familiar with the matter.

Me, it was me: I mocked back in 1999, and guess what: I'm mocking now, even more - about 50 times more.

Don't Mess With Our Thing

This litany of music industry woes is an object lesson in what happens if you fight the (Net) Family:

The major labels are struggling to reinvent their business models, even as some wonder whether it's too late. "The record business is over," says music attorney Peter Paterno, who represents Metallica and Dr. Dre. "The labels have wonderful assets -- they just can't make any money off them." One senior music-industry source who requested anonymity went further: "Here we have a business that's dying. There won't be any major labels pretty soon."

Amazingly, it could have all been so different:

Seven years ago, the music industry's top executives gathered for secret talks with Napster CEO Hank Barry. At a July 15th, 2000, meeting, the execs -- including the CEO of Universal's parent company, Edgar Bronfman Jr.; Sony Corp. head Nobuyuki Idei; and Bertelsmann chief Thomas Middelhof -- sat in a hotel in Sun Valley, Idaho, with Barry and told him that they wanted to strike licensing deals with Napster. "Mr. Idei started the meeting," recalls Barry, now a director in the law firm Howard Rice. "He was talking about how Napster was something the customers wanted."

So near and yet so far. (Via IP Democracy.)

Time for BBC to Face the Music

Great to see the plucky Open Source Consortium getting its terrier-like teeth into the corpulent flesh that is the BBC:

The Open Source Consortium has written to Ofcom, the Office of Fair Trading (OFT) and the BBC Trust, asking for a re-examination of the effects of the BBC's iPlayer (TV on-demand) service being tied into Microsoft Windows Media Player for at least two years and, by extension, new versions of Windows, to be considered.

OSC Chief Executive Iain Roberts said "This action from the BBC effectively promotes one operating system vendor at the expense of others. It is very disturbing that the BBC should be using licence payers' money to affect the operating system market in this way. Imagine if the BBC were to launch new digital channels, but only make them available on a certain make of television - there would be uproar."

We can't let the BBC get away with this, and it's great to see the OSC stepping into the arena to take on the bloated behemoth.

WIPO Webcast Wipe-Out?

Good news, it seems:

World Intellectual Property Organization negotiations for a treaty on rights for broadcasters broke down at the eleventh hour, according to participating government officials. A high-level final treaty negotiation scheduled for November will not take place, they said.

This was a treaty that would have effectively killed fair use for "webcasting" - essentially distributing media files online. There's still a slight danger that the wicked WIPO witch isn't quite dead:

Government sources stopped short of calling the treaty talks dead forever, saying that proponents might still propose a way to resume the talks in the future.

Fingers crossed.

Update: My characterisation of the threat is ill-expressed at best, and downright wrong at worst. Try Ars Technica for something better.