Google: Don't Be Evil - Unless It's Profitable

I knew that GoDaddy was evil, but this tie-up between the company and Google suggests that the latter is moving deep into the darkness too.

The scheme goes by the inglorious name of "CashParking": basically, it encourages scammers to register every possible domain name, and then load the home pages up with Google AdSense to generate some money from the poor individuals who wander there by mistake. As a result, it will reduce the overall attractiveness and value of the Web, and encourage even more of this behaviour. Typical parasitism, in other words.

Shame on you, Google: aren't your soaraway profits enough? (Via Searchblog.)

JBoss's Secret of Success

A long and thoughtful post by Matt Asay on why JBoss has been so successful. No secret sauce, but plenty of fascinating figures along the way. This is an area I'm getting into in a big way: my recent LWN.net article was a shot across the bows. You have been warned.

United Nations of Free Software

Here's a useful round-up of free software projects at the United Nations - there's more than you might think. Pity that this section is so mealy-mouthed:

Most of the traditional software industry has its base in the developed world; there is concern that promoting FOSS could hurt this industry. From the developing countries' perspective, however, FOSS is a way to introduce competition in order to lower costs and expand options. The different views of the role of software in development have hindered the UN's ability to create a single coherent strategy for FOSS to apply to all member states.

Free software does not "hurt" the traditional industry, it merely brings a much-needed balance between users and suppliers. Business models may change, but as IBM and others have shown, there's plenty of money to be made under this new regime. To phrase it in terms of "hurt" gives succour to outdated and paternalistic practices that have no place in the new computing landscape.

First Catch Your Neanderthal

This stuff is getting too easy.

First, find some ancient remains - Croatian Neanderthal bones are great. Next, sequence lots - at least 20 times coverage. Don't worry if all you're getting are tiny fragments with around 100 DNA letters, and the signal is vastly swamped by bacterial noise. Just bung the results into a computer, and tell it (a) to cancel out all bacterial genome sequences (b) to join up all the rest. Result: one Neanderthal genome.

There's just one problem:

If the Neanderthal genome were fully recovered, it might in principle be possible to bring the species back from extinction by inserting the Neanderthal genome into a human egg and having volunteers bear Neanderthal infants. There would, however, be great technical and ethical barriers to any such venture.

Understatement of the Year, Number 369.

Open Source Planes

First cars, then trains, now planes. New Scientist is reporting that it is now possible to create almost an entire plane by "printing" the components:

In rapid prototyping, a three-dimensional design for a part - a wing strut, say - is fed from a computer-aided design (CAD) system to a microwave-oven-sized chamber dubbed a 3D printer. Inside the chamber, a computer steers two finely focussed, powerful laser beams at a polymer or metal powder, sintering it and fusing it layer by layer to form complex, solid 3D shapes.

Two things are interesting here. First, this is precisely what Michael Hart, the founder of Project Gutenberg, has been predicting for years. Indeed, he sees Project Gutenberg, which essentially lets you print your own books, as just the first, quite small step in the next industrial revolution, where physical objects will be printed routinely.

Secondly, note that the parts are printed under the control of a software program. So if the program and the data are open, this means that effectively the physical object will also be open. As usual, openness brings with it all the usual advantages of speed and lack of redundancy - you can re-use parts or parts of parts in other designs to create quickly entirely new objects.

The Office of Intellectual Monopolies

The group behind the Adelphi Charter has apparently proposed that the UK Patent Office be replaced with an Office of Intellectual Property:

The proposed new statutory body, the Office of Intellectual Property, with the suggested acronym OfIP, would cover all kinds of IP, including copyright and patents, and would have to report annually to the British Parliament on its activity, said John Howkins, director of the Creative Economy Forum, which put forward the proposal. The forum is a group of international IP experts - business, academics, non-governmental organisation representatives - interested in the creative economy.

An interesting idea, though I'm not wild about enshrining the term "intellectual property" in the title: how about the Office of Intellectual Monopolies? That's got a nice Orwellian ring about it.

The Open Body, Biometric Spoofing and ID Cards

Our bodies are open. That is, unless we are planning some criminal activity, we do not try to hide the basic physical facts about ourselves - our voice, our face, our eyes, our fingerprints. Unfortunately, these are precisely the characteristics that biometric ID schemes depend on for verification. This is tantamount to walking around with a large sign saying "my password is xxxx".

And this isn't just my opinion. Here's what one Bori Toth, biometric research and advisory lead at Deloitte & Touche, no less, has to say on the subject:

Many people are trying to regard biometrics as secret but they aren't. Our faces and irises are visible and our voices are being recorded. Fingerprints and DNA are left everywhere we go and it's been proved that these are real threats.

So the use of precisely these spoofable biometrics is just one more reason to bin the whole idiotic ID card idea, which rather depends on them being foolproof. (Via Slashdot.)

OOo or Aaargh!?

Here's a good analysis and general round-up of why Microsoft's decision to produce an extremely spiffy and completely different interface for Office 2007 was as bad a move as a very bad move can be. For me, the killer quote is:

OpenOffice.org and Microsoft Office Currently Look More Similar Than Office 2003 and Office 2007
Training your users to go from Office 2003, or before, to OpenOffice.org, might be easier than teaching them the whole new Office 2007 system.

Just how easy is Microsoft trying to make the decision to jump to OpenOffice.org?

10 (More) Things to Build Blog Readership

I only mention this because it's similar to my own list from February. Well, similar and better, actually. (Via C|net.)

Open Innovation...

...is all very well, but will only work properly if attitudes to current intellectual monopolies change. Simply licensing stuff to and from others will prove too sclerotic without a radical simplification in the area of patents.

What is needed is a commons-based approach, where most ideas are available for all to use: then the value is added in the way ideas are combined, not just in coming up with them in the first place.

Tanenbaum Rides Again

For younger readers of this blog, the name Andy Tanenbaum may not mean much. But for oldies such as myself, it is highly redolent of those epic days when Linux was but a fledgling kernel, and taunts like "your mother was a hamster" and "Linux is obsolete" were thrown down like gauntlets.

I had the pleasure of interviewing Tanenbaum for my book Rebel Code, and it was fascinating to learn how close he came to creating what we now call GNU/Linux with his Minix. But Tanenbaum failed to do one crucial thing that Linus did almost without thinking: to let go. Understandably, as a professor of computer science Tanenbaum wanted to keep control of his teaching materials. But that one, tiny, reasonable brake was enough to stunt the growth of Minix and lend wings to Linux when it appeared in 1991.

Tanenbaum is still teaching, at the Vrije Universiteit in Amsterdam (another Dutch story, then - must be the Rembrandt Effect), and I was interested to note this piece about some of his recent work on developing an anti-RFID device. Good to see him still moving forward in his work. (Via openspectrum.info.)

Not-So-Naked Conversations

A short, but interesting reflection on the changing nature of conversations - naked and not-so-naked. The key point:

The bottom line is that technology ushers in new forms of social organization that escape notice precisely because they are invisible to adherents of the old paradigm.

Something's Rotten in the Domain Name System

Although I can't quite claim to go back to the very first commercial domain, I do remember the Wired story about how many major US corporations had neglected to register relevant domains. And I also remember how around $7.5 million was paid for the utterly generic and pointless business.com domain.

So I've seen a thing or two. And yet I can still be disgusted by the depths to which the scammers can sink when it comes to domain names. Try this, for example: a company that seems to be magically reserving domain names shortly after people have entered them as a Whois search - only to dump it if it doesn't pull in any traffic.

It's this kind of parasitical business model that is pushing the domain name system close to breakdown, and making the Internet far less efficient than it could be.

OpenOffice.org Goes Dutch

Just in time for Rembrandt's 400th birthday, here's some good news from Holland:

De gemeente Groningen heeft besloten om een overeenkomst met Microsoft voor de levering van de Office-suite van de softwaregigant te laten verlopen. De noordelijke gemeente heeft namelijk besloten om over te stappen op het opensourcepakket OpenOffice.org. Hiermee is de gemeente Groningen volgens eigen zeggen de grootste gemeente in Nederland die serieus met opensourcesoftware aan de slag gaat.

Which, I think, says (roughly) that the northern Dutch municipality Groningen has decided not to renew its contract with Microsoft for Office, but to go with OpenOffice.org, confirming Groningen's position as the open source leader in Dutch local government.

What's interesting is that it's OpenOffice.org that's driving open source uptake again. Sure, Firefox is more widely used, but it rarely figures as a conscious decision. And it's certainly not one that loses Microsoft any revenue (though its managers probably lose some sleep), as OpenOffice.org will in Groningen, to the tune of 330,000 Euros. (Via LXer.)

Bill Gates Wants to Share "Openly"

It looks like Bill Gates is one step closer to getting it. According to this press release from his foundation, regarding a major research grant to create a series of research consortia to accelerate HIV vaccine development:

These consortia will be linked to five central laboratories and data analysis facilities, enabling investigators to openly share data and compare results, and allowing the most promising vaccine approaches to be quickly prioritized for further development.

...

As a condition for receiving funding, the newly-funded vaccine discovery consortia have agreed to use the central facilities to test vaccine candidates, share information with other investigators, and compare results using standardized benchmarks.

In other words, Gates is demanding open data sharing, and maybe open access too (it's not clear yet, as Peter Suber notes).

But this is a slippery slope, Bill: once you accept the inherent efficiency of sharing data "openly", as the press release emphasises, it's only a short conceptual leap before you find yourself accepting and then encouraging the other ways of sharing stuff "openly"....

No Comment, No MT et al.

Comments are the ichor that courses through the blogosphere's veins. A blog with no comments is probably dead, and a blogger that doesn't comment on the blogs of others probably needs to get out more.

But if it's hard enough keeping track of all the interesting things happening so that you can blog about some of them, keeping track of all the comments to your comments has been practically impossible. No longer. As this TechCrunch piece notes , there are now no less than three rival services that will help you track comments. Maybe I ought to try one.

Virtually Spot On

I have to admit that I tend to read The Reg more for its entertainment value than for its incisive analysis (with the honorable exception of John Lettice's pieces on ID cards, which always manage to be worth reading on both counts). But there's no doubt that sometimes there's some sharp thinking as well as sharp writing.

Like this piece on Microsoft's snuggle-up with XenSource in the field of server virtualisation:

Knowing that it can't compete in the market in the interim, Microsoft has played the old IBM trick of creating confusion. Don't go with VMware. Go with XenSource. That's who we like. Have a look at what they have to offer.

Spot on.

Blooks Like the Future

Blooks are generally blogs turned into books, but I suppose we can stretch the term to include books that are available from blogs. Here's a heartening story about the latter type.

A novelist became fed up waiting for an agent or publisher to deign to acknowledge his existence (don't we all know it?). So he did the obvious thing: bunged it up on his Web site for anyone to download. His reasoning?

I'm putting this full-length novel online and encouraging you to read it, send it to your friends, blog about it, distribute it on your blogs, etc. and we'll all see what happens. Maybe nothing. But maybe ... something. In fact after weighing the pros and cons of doing this, I can't find any actual downside.

I wrote The Agency Delta because I had a story. Now I want people to read it. I think it's a great story. Now tell me what you think.

This is the future, you writer people. (Via Self Publish Blooks.)

Indian Summer of Code

I wrote earlier today about the fallacy of assuming that once you start offering money the spirit that informs the world of collaborative efforts like open content evaporates, leaving crass cupidity. It occurred to me afterwards, that we have already been here before.

Back in 1998, the first wave of open source IPOs hit. One of the main beneficiaries of the VA Linux IPO was Eric Raymond. As he wrote at the time:

A few hours ago, I learned that I am now (at least in theory) absurdly rich. ... VA had indeed gone out on NASDAQ -- and I had become worth approximately forty-one million dollars while I wasn't looking.

He then turns away from this typically self-centred story to examine (with characteristic insight) the wider implications of the IPOs that were happening:

Reporters often ask me these days if I think the open-source community will be corrupted by the influx of big money. I tell them what I believe, which is this: commercial demand for programmers has been so intense for so long that anyone who can be seriously distracted by money is already gone. Our community has been self-selected for caring about other things -- accomplishment, pride, artistic passion, and each other.

This is still true. As proof, witness the Season of KDE 2006:

As in 2005, KDE again was a participating organization in this years Google Summer of Code 2006. Many interesting and much needed project ideas were submitted and students from all over the world began to apply for them. The KDE project received more than 200 student applications. Sadly Google's capacities are not limitless and thus, only 24 students were selected to participate in Google's Summer of Code under the mentorship of the KDE project.

Driven by the urge not to let many good applications go to waste the KDE project decided to give many of the rejected students a chance to realize their ideas after all in the first Season of KDE. Since KDE does not have Google's financial capacities the students will not get paid for their efforts. Still it is a very good opportunity for students to get involved in KDE development while being mentored by an experienced KDE developer and as a result be an active part of the Free Software Community.

In other words, no Google moolah is flowing, but the aspirants coders are still coding - out of sheer hacker love. Kudos to the students for doing so, and to their mentors for giving their time. That's what this open stuff is all about.

Free Software is Trendy

Like many, I've had great fun playing around with Google Trends. The tricky thing is trying to find something sensible to say about what you find there. Luckily, when it comes to GNU/Linux and related matters, Steven Vaughan-Nichols has already done it.

Open Source, Meet the Mainstream

Matthew Aslett usefully flags up in his blog the rise and rise of open source in canonical top ten lists of computing - like the one is his own title, Computer Business Review. Yes, it's all arbitrary of course, but is always has been; so the appearance of open sourcey-ness all over the place is symptomatic, if nothing else.

(Parenthetically, I was pleased to see Angela Eager mentioned in his post: I gave Angela one of her first jobs in tech journalism a couple of geological epochs ago. It's good to see that training stood her in good stead.)

Open Content: Some Get It, Some Don't

Larry Sanger (who does) explains to Jason Calcanis (who doesn't) what all this open content is really about - and why it isn't going away once companies start waving fistfuls of dosh in the air.

Why Linus Still Matters

A little while ago I wrote about a slightly provocative list from Business 2.0 that suggested that a certain Linus Torvalds doesn't really matter any more. Joe Barr has followed this up with a hilarious exchange with The Man to find out his feelings on the same. An excerpt:

NewsForge: Have you really made a billion dollars from Linux?

Torvalds: No. Linux was just the cover story. I made all my money smuggling drugs while traveling to international conferences under the guise of talking about "the future of technology" or some such tripe.

It's wit like this that shows most clearly why Linus does matter. (Via fUSION Anomalog.)

ODF Viewer for Firefox

As ODF continues its long march to conquer the world, the number of ODF documents that you come across online will increase. This makes an ODF Viewer for Firefox an indispensable tool. And there's one on the way - but be careful, it's alpha code only at the moment. (Via Bob Sutor's Blog.)

The Open Source Mesh Begins to Mesh

I'm a big fan of open source meshes, with their potential to offer alternative ways of accessing the Internet. I'd not heard of the Champaign-Urbana Community Wireless Network before, but this story on GigaOM about serious NSF backing for work on an open source mesh network looks promising.

Open Access to Open Access, the Book

An important new collection of essays on open access has been published. It's called Open Access: Key Strategic, Technical and Economic Aspects. Hearteningly, most of the chapters have been self-archived by the authors: kudos to them for doing so, and to Chandos Publishing for being enlightened enough to allow it. (via Open Access News.)

ODF a Standard in Malaysia?

The word is spreading: it seems that ODF is likely to become a standard in Malaysia, too. (Via Bob Sutor's Blog.)

Trouble at 't Mill

The World Wide Web Consortium (W3C) is the sticky stuff that holds the Web together; without it, the whole caboodle would slowly come unstuck, fraying into lots of proprietary strands.

So this kind of posting, which seems to indicate problems at the heart of the W3C, is deeply worrying:

I believe for our society to progress it's essential that our culture, our knowledge, and our society itself are as accessible as possible to everyone; web standards are how we choose to achieve this on the World Wide Web, and for us to communicate, especially if we have special needs or novel ideas about information access, it depends on compliance to web standards. With this in mind I became interested in assuring standards compliance on the Web and involved in the development of tools meant to help in this respect at the World Wide Web Consortium seven years ago.

I now have to discontinue my participation in this area at the W3C and would like to explain how the World Wide Web Consortium failed to provide what I think would have been and still is necessary to advance the tools and services to an acceptable level, which will explain why I am leaving now.

(Via Slashdot.)

OOo-La-La!

An interesting report from the French Ministry of Defence, that OpenOffice.org may have neglected some security issues in its headlong rush to achieve parity with Microsoft Office. The problem seems to lie with macros, and frankly, I'm not surprised. I never use them, and I really think that anyone who does is asking for trouble. A word processor is for, you know, processing words; it does not need to pass the Turing Test.

Still, this is the kind of stuff that's easily fixed with the odd huge window marked "Danger: do not run this macro" every five seconds. (Via in Ars Technica.)

From Elephant's Dream to Boy Who Never Slept

What makes a film open source? I've written before about Elephant's Dream, which is open source in the sense you can download all the Blender files that go to make it up. And now there's this:

Boy Who Never Slept is a free full length movie that anyone can watch, share, and even use in their own derivative works (open source).BWNS is about an insomniac writer and his relationship with a teenage girl he meets online. What begins as merely a friendship, evolves into an unlikely love wrapped in harsh reality..

There's a more thoughtful explanation, too:

In this sense an open source movie refers to finished video content released with a derivative license along with the "source" or original files used to create the finished video, are released with a derivative license as well. This allows a lot more ability for new artists to edit, remix, and evolve the original work.

Other items that may or may not be released along with the video content include the script or screenplay, the soundtrack, and the sound effects.

These source files are available here. (Via Enterprise Open Source Magazine.)

World (Wide Web) War 2.0

One noticeable effect of blogs is that they can bring out the worst in people. In part, this is the email problem of being unable to judge tone writ large. But it also seems to be the case that the sheer ease-of-use of the medium encourages all kinds of loonies to creep out of the woodwork. Religious wars on the relative merits of free software and open source are quite mild compared to no-holds-barred attitude among the political blogs, which seem to polarise writers and readers alike.

That's why I tend to avoid sites like the one this appeared on, but as you will see from the post in question, something interesting is about to happen: the self-professed "lizardoids" are about to take on the "moonbats" in the Web 2.0 arena. What this means in practice is that there are going to be huge battles for the soul of Digg, with lots of marking up and down.

It might be quite entertaining, but it certainly won't be pretty. (Via BGSL.)

The Mega-Important MicroRNAs

Yesterday, when I was writing about the structures found in DNA, I said

Between the genes lie stretches of the main program that calls the subroutines

This is, of course, a gross over-simplification. One of the most interesting discoveries of recent years is that between your common or garden genes there are other structures that do not code for proteins, but for strings of RNA. It turns out that the latter play crucial roles in many biological processes, for example development. Indeed, they are fast emerging as one of genomics' superstars.

So it is only right that Nature Genetics should devote an entire issue to the subject; even better, it's freely available until August 2006. So get downloading now. Admittedly, microRNAs aren't the lightest of subject-matters, but they're mega-important.

Last Night a DVD Saved My Life

Last night, my Windows 2000 box died. To be fair, it was nothing to do with Windows, but a dodgy hard disc. And yes, of course I have backups...it's just that they're not entirely up-to-date, and missing even a few days' data is a pain. I could re-install Windows and hope that gave me access to my data (stored on a separate partition), but this would take a few hours that I don't have, and might not work. Luckily there's a better way.

Booting up the PC with the Knoppix 5.0 Live DVD inside produced not only a working machine in a couple of minutes, with access to all of my data, but a cool 5000 programs at my beck and call. Including K3b, which meant that I could simply burn copies of the data I was missing. Problem solved.

Thanks, Knoppix: you're a gent.

The Personal Genome Part 265

Here's Nick Wade reviewing candidate technologies for the sub-$1000 genome. It's coming, people.

The Future of Media

The Future of Media Report has two main things going for it. First, it comes from an Australian group, which gives it a slightly different perspective on things. Secondly, it is packed full of interesting graphs and charts. Make that three: it's available under a liberal CC licence.

If Not Net Neutrality - What?

That old contrarian curmudgeon, Andrew Orlowski, has found a soul-mate in Richard Bennett: "[t]he veteran engineer played a role in the design of the internet we use today, and helped shaped Wi-Fi" as Orlowski explains before an interview. In addition,

Bennett argues that the measures proposed to 'save' the internet, which in many cases are sincerely held, could hasten its demise. Network congestion is familiar to anyone's whose left a BitTorrent client running at home, and it's the popularity of such new applications that makes better network management an imperative if we expect VoIP to work well. The problem, he says, is that many of the drafts proposed to ensure 'Net Neutrality' would prohibit such network management, and leave VoIP and video struggling.

The conversation that follows is extremely interesting, and certainly hits home. But I have big problems with this part:

They all seem to be worried that ISPs have secret plan to sell top rank - to pick a search engine that loads faster than anyone else's. But it's not clear that a), anyone has done that; b), that it's technically achievable; or c) that it is necessarily abusive; or d) that their customers would stand for it.

These all seems very weak arguments in against net neutrality; I'd rather err on the side of hippy edge-to-edge goodness.

TOPAZ Tarnished

I've written approvingly of PLoS ONE before, and it's also good to see that the underlying software platform will be open source. But I was disappointed to read this post calling for some "help to shape the future":

Now is your chance to get very actively involved in the creation of TOPAZ, the new Open Source publishing platform which PLoS is involved in developing and which will be supporting PLoS ONE when it launches. What we need is some people in the San Francisco area who would be willing to be on a focus group to give us some advice on the feel and functionality that you would like to see. It is a great project and we really do want your views.

Surely a global perspective is absolutely critical to what PLoS ONE is trying to achieve? So limiting focus groups to a very particular part of the anglophone world seems foolish, to say the least.

And it's not as if there aren't other ways that this could be done, taking input from all around the world. For example, I've heard this thing called "The Internet" can be quite handy in these circumstances....

The Other GNU/Linux

Think of GNU/Linux and you probably think of servers, maybe with a smidgeon of desktop thrown in for good measure. In fact, the domain where GNU/Linux utterly dominates is that of high-performance computing.

But it may be that GNU/Linux's finest hour is yet to come - as a mobile phone operating system. After all, it is likely that there will be a mobile phone for most people on this planet one day, but the same cannot be said about conventional PCs.

So news stories like this one, about the doubling of membership of a GNU/Linux phone standards group, are actually rather important.

But dull.

Theses Unbound

OK, I admit it: I chose this for the title again. Well, "consultation on a national e-theses service for the UK" isn't quite so exciting.

The Internet? It's a Series of (You)Tubes

Is it just me, or has the entire VC industry gone utterly bonkers over Internet video? It seems that every day there's a new YouTube me-too launch on TechCrunch - with the usual "I think it's got potential" that seems to accompany every such story - and now, thanks to IP Democracy, we have a neat little table that suggests that VCs are, indeed, barking:

we take a look at the amount of venture money that has flowed into IP video start-ups over the past year and find that over $600 million has been invested in the YouTubes and Sling Medias and MobiTVs of the world since around this time last year. Our list (see table below) doesn’t even include investments for web sites or technology companies that focus a lot — but not primarily — on IP video efforts.

I realise that the Internet is a series of tubes, but as far as video is concerned, things really seem to be going down them.

EU Parliament Gets a Touch of the Opens

Blige, serious goings-on in the EU parliament. In a text recently adopted, it

18. Takes note of the Commissions' view that the EU must acquire a cost-effective, legally watertight and user-friendly system of intellectual property protection so as to attract technologically advanced companies; considers that the protection of intellectual property must not interfere with open access to public goods and public knowledge; urges the Commission to promote a socially inclusive knowledge-based society by supporting, for example, free and open source software and licensing concepts like the General Public License (GPL) and the Public Documentation Licence (PDL);

This is a gauntlet thrown down to the European Commission, particularly Microsoft's friend, Mr McCreevy. I wonder what will happen next. (Via Heise Online.)

Open Source is Better - Ask a Virus Writer

Virus writers are not known for their morals - or for being fanboys: they will use whatever means necessary to achieve their dubious ends. So when MacAfee warns that

Malicious-software writers are increasingly using open-source methodologies when developing their code

you can be pretty sure that this follows an extremely objective evaluation of the various competing development methods.

Maybe not quite the testimonial most free software enthusiasts were looking for, but a testimonial nonetheless.

The World's First Open Source Man

The genome – the totality of DNA found in practically every cell in our body - is a kind of computer program, stored on 23 pairs of biological DVDs, called chromosomes. Within each chromosome, there are thousands of special sub-routines known as genes. Between the genes lie stretches of the main program that calls the subroutines, as well as spacing elements to make the code more legible, and non-functional comments – doubtless deeply cool when they were first written – that have by now lost all their meaning for us.

DNA's digital code – written not in binary, but quaternary (usually represented by the initials of the four chemicals that store it: A, C, G and T) – is run in a wide range of cellular computers, using a central processing unit (known as a ribosome), and with various initial values and time-dependent inputs supplied in a special format, as proteins. The cell computer produces similarly-formatted outputs, which may act on both itself and other cells.

Thanks to a far-sighted agreement known as the Bermuda Principles, the digital code that lies at the heart of life is freely available from three main databases: one each in the US, UK and Japan. As a result, the DNA that was obtained through the Human Genome Project is open source's greatest triumph.

But so far, no human genome can be said to represent any single human being: that of the Human Genome Project is in fact a composite, made up of a couple of dozen anonymous donors. But soon, all that will change; for the first time, the complete genome of a single person will be placed in the public databases for anyone to download and to use, creating in effect the world's first open source man.

His name is Craig Venter, and for nearly two decades he has been simultaneously revered and reviled as one of the most innovative researchers in the world of genomics. He was the person behind the company Celera that sought to sequence the human genome before the public Human Genome Project, with the aim of patenting as much of it as possible. Fortunately, the Human Genome Project managed to stitch together the thousands of DNA fragments it had analysed – not least thanks to some serious hardware running GNU/Linux – and to put its own human genome in the public domain, thus thwarting Celera's plans to make it proprietary.

A nice twist to this story is that it turned out that Celera's DNA sequence was not, as originally claimed, another composite, but came almost entirely from one person: Craig Venter himself. So his latest project is in many ways simply the completion of this earlier attempt to become the first human with a fully-sequenced genome. The difference now, though, it that it will be in the public databases, and hence accessible by anyone.

This will have profound consequences. Aside from placing his DNA fingerprint out in the open – which will certainly be handy for any police forces that wish to investigate Venter – it means that anyone can analyse his DNA for anything. At the very least, scientists will be able to carry out tests for genetic pre-dispositions to all kinds of common and not-so-common diseases.

So it might happen that a laboratory somewhere discovers that Venter is carrying a genetic variant that has potentially serious health implications. Most of us will be able to choose whether to take such tests and hence whether to know the results, which is just as well. In the case of incurable diseases, for example, the knowledge that there is a high probability – perhaps even certainty – that you will succumb at some point in the future is not very useful unless there is a cure or at least a treatment available. Venter no longer has that choice. Whether he wants it or not, others can carry out the test and announce the result; since Venter is a scientific celebrity and a public figure, he is bound to get to hear about it one way or another.

So while his decision to sequence his genome might be seen as the ultimate act of egotism, by choosing to publish the result he will in fact be providing science with a wonderfully rich resource - the complete code of his life - and at some considerable risk, if only psychological, to himself.

The Dangers of Open Content

Here's a nice story involving Elephant's Dream and Wikipedia - and a reminder that the latter is best regarded as a rough guide or a starting point, to be used with intelligence, not instead of it. (Via Slashdot.)

More Microsoftie FUD

Another comparative "analysis" of security flaws in Windows and Red Hat. The result: Windows is better - the figures prove it. Well, yes, but let's look at those figures at little more. The giveaway is this paragraph:

Because of the nature of the Open Source model, there seems to be a higher tendency (unscientificly speaking) to just copy a piece of code and reuse it in another components. This means that if a piece of code turns out to be flawed, not only must it be fixed, but also that maintainers must find every place they might've reused that blob of code. A visual inspection showed me that many of these were the multiple vulnerabilities affecting firefox, mozilla and thunderbird. In a typical example, firefox packages were fixed, then mozilla packages were fixed 4 days later, then thunderbird was fixed 4 days after that.

Note that it says "In a typical example, firefox packages were fixed, then mozilla packages were fixed 4 days later". So one reason why Red Hat has more vulnerabilities is that it has far more packages included, many of which duplicate functions - like Firefox and Mozilla. The point is, you wouldn't install both Firefox and Mozilla: you'd choose one. So there's only one vulnerability that should be counted. Not only that, but Red Hat is penalised because it actually offers much more than Windows.

I don't know what the other vulnerabilities were, but I'd guess they involved similar over-counting - either through duplication, or simply because Red Hat offered extra packages. By all means compare Windows and Red Hat, but make it a fair comparison.

Wikipeda Does RSS

I amazed this hasn't been done before: you can now track changes to Wikipedia articles through an RSS feed. If you use Firefox, say, to go to the history tab of the page that interests you, you'll find the standard orange radio symbol in the address bar like any other RSS feed.

This is clearly great, because it means that you can watch how pages of interest to you change; it's also clearly terrible, because it means that edit war loonies will be able to engage even more rapidly. (Via Micro Persuasion.)

The Value of the Public Domain

More light reading - this time about the public domain. Or rather, a little beyond the traditional public domain, as the author Rufus Pollock states:

Traditionally, the public domain has been defined as the set of intellectual works that can be copied, used and reused without restriction of any kind. For the purposes of this essay I wish to widen this a little and make the public domain synonymous with ‘open’ knowledge, that is, all ideas and information that can be freely used, redistributed and reused. The word ‘freely’ must be loosely interpreted – for example the requirement of attribution or even that derivative works be re-shared, does not render a work unfree.

It's quite academic in tone, but has some useful references (even if it misses out a crucial one - not that I'm bitter...).

Innovation Happens Elsewhere - Online, Too

Ron Goldman and Richard P. Gabriel have made available an online version of their book Innovation Happens Elsewhere: Open Source as Business Strategy. It's a well-written and highly-approachable introduction to open source, mainly for those thinking about using free software in business.

I particularly like the following take:

Open source is fundamentally about people volunteering to work on projects in what could be called the commons; that is, it is about working on things for the public good.

This idea will come as no surprise to readers of this blog, but it's still a novel viewpoint for many. The rest of the book shows a similarly refreshing originality in its approach. (Via Creative Commons blog.)

Net Neutrality and Open Spectrum

David Levine has an interesting post that joins the dots connecting the net neutrality debate with the issue of creating a spectrum commons. I don't share his concerns about imposing net neutrality through legislation, but I certainly agree that breaking the last mile monopoly through wireless is ultimately a better solution. And while we're at it, let's try and get some global wireless meshes going too.

ODF A.G. (After Google)

It's curious the low-key way that Google has joined the ODF Alliance. But there's no mistaking the impact and importance of that move. IBM's Bob Sutor has some interesting observations in this context. Two in particular:

It is up to Google to say what they want about this, but, as I noted last night, ODF Alliance membership jumped by 20 members in the few days following the news of their membership.

and

OpenDocument is bringing on a Renaissance of document creation and publishing. That which we used to know is being rediscovered and combined (mashed together) with what we have learned recently.

The orthodoxy of "this is how you create office documents" is going to fall by the wayside, though there will opposing kingdoms and battles and heretics and maybe even a few heros emerging.